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How to use this site to your advantage ... and not get lost
How to benefit the most of this site?
Just follow the steps as below:
- The first possibility (and a highly recommended one) is just to visit it frequently, in order to stay aware of the newly published articles or sources of information as soon as they are posted.
- Further, since the most recent 4,520 postings from the total of 8,080 originally posted are presently available (as of May 19, 2024) and arranged as per date of posting, you can do a search according to your specific interests. In doing that, you go to the upper right corner ("Search in topic" depicted with a label), where you can just use the descriptors that are available there, i.e. "Tags", which are ordered alphabetically. Another possibility is to type there a keyword (or an entire phrase) that can be the name of an author or a word/phrase contained in the title/abstract or anything you deem relevant. That way you will be shown a reduced number of sources being more relevant to your specific interest(s).
Hoping this will be useful and waiting for feedback to keep improving the site, I wish all the best
Julio Retamales (the curator)
NOTE: Certainly, given the sheer number of articles being published currently on the relevant issues, no claim for completeness can be provided. Therefore, only samples of papers and/or sources arbitrarily selected by the curator are posted here, intending to show the diversity of phenomena in which plant hormones can be involved.
Authors: Tian Su, Ziwei Li, Yinghua Zhang, Junqiang Xu and Bin Xu.
Journal of the American Society for Horticultural Science (2024)
Abstract: "Cucumber (Cucumis sativus L.) belongs to the cucumber genus of the Cucurbitaceae family, and the selection of cultivars with minimal or no lateral branches can enhance the cultivation management efficiency. The growth of lateral branches is inhibited by strigolactone. To investigate the regulatory mechanism of strigolactone on the lateral branch development in cucumber, the cultivar LZ1 exhibiting multiple lateral branches was selected as the experimental material. The axillae of the plants were infiltrated with 1, 5, and 10 μmol·L−1 germination releaser 24 (GR24) at the four- to five-leaf stage. It was identified that 1 μmol·L−1 GR24 exhibited the most potent inhibitory effect on cucumber lateral branches. Additionally, exogenous strigolactone decreased the auxin content in the apical bud and axillae and increased the auxin content in the stem. This inhibited polar auxin transport in the axillary bud and promoted polar auxin transport in the apical bud. The content of strigolactone in the axilla region of cucumbers was elevated, whereas the synthesis and expression of cytokinin in the same area were reduced. A low concentration of GR24 induced the expression of cucumber branched 1 (csbrc1), whereas a high concentration of GR24 downregulated the expression of cucumber lateral suppressor (cscls) and blind (csblind), which inhibited the growth of cucumber lateral branches."
Authors: Nathalie Kuhn, Macarena Arellano, Claudio Ponce, Christian Hodar, Francisco Correa, Salvatore Multari, Stefan Martens, Esther Carrera, José Manuel Donoso and Lee A. Meisel
Journal of Plant Growth Regulation (2024)
Abstract: "Abscisic acid (ABA) is a plant hormone that plays a key role in the ripening process of non-climacteric fruits, triggering pigment production, fruit softening, and sugar accumulation. Transcriptional studies show that ABA modifies the expression of several ripening-related genes, but epigenetic effects of ABA during this process are lacking. Therefore, this work aimed to perform transcriptomic and DNA methylation analyses of fruit samples treated with ABA during the fruit ripening process in the non-climacteric sweet cherry model. RNA-seq analyses revealed an overrepresentation of transcripts annotated in functional categories related to ABA response, secondary metabolism, and sugar synthesis during fruit ripening. In contrast, Whole Genome Bisulfite Sequencing (WGBS) analyses revealed DNA hypomethylation in the 5′UTR region of genes related to carotene catabolism. Transcriptional and epigenetic regulation of genes encoding xyloglucan enzymes, associated with cell wall modifications, were also detected. ABA treatment enhanced fruit color development and the accumulation of ripening markers, including carotenoids and several anthocyanins. Gene Ontology analysis in the RNA-seq of ABA-treated fruits revealed expression variations in genes encoding members of the Aux/IAA and ARF families. In the WGBS analysis, genes encoding enzymes for cytokinin biosynthesis had differential DNA methylation after the ABA treatment. Our work identified ABA-modulated factors at the genetic and epigenetic levels, suggesting complex hormone networks controlling non-climacteric sweet cherry fruit ripening."
Authors: Dachuan Gu, Shuhua Wu, Yuxin Wang, Yuhua Yang, Jiaming Chen, Kaiquan Mao, Yinyin Liao, Jianlong Li, Lanting Zeng and Ziyin Yang.
Plant, Cell & Environment (2024)
Summary statement: Tea green leafhopper infestations affect tea plant growth by altering the synthesis of brassinolide. The results of this study broaden our understanding of the brassinolide response induced by insect-related biotic stress in horticultural crops.
Abstract: "Tea green leafhoppers are insects widely distributed in major tea-growing areas. At present, less attention has been paid to the study on effect of tea green leafhopper infestation on tea growth phenotype. In this study, tea green leafhoppers were used to treat tea branches in laboratory and co-treated with brassinolide (BL), the highest bioactivity of brassinosteroids (BRs), in tea garden. The results showed that the expression of genes related to BRs synthesis was inhibited and BL content was reduced in tea shoots after infestation by tea green leafhoppers. In addition, area of each leaf position, length and diameter of internodes, and the biomass of the tender shoots of tea plant were decreased after infestation by tea green leafhoppers. The number of trichomes, leaf thickness, palisade tissue thickness and cuticle thickness of tea shoots were increased after tea green leafhoppers infestation. BL spraying could partially recover the phenotypic changes of tea branches caused by tea green leafhoppers infestation. Further studies showed that tea green leafhoppers infestation may regulate the expression of CsDWF4 (a key gene for BL synthesis) through transcription factors CsFP1 and CsTCP1a, which finally affect the BL content. Moreover, BL was applied to inhibit the tea green leafhoppers infestation on tea shoots. In conclusion, our study revealed the effect of plant hormone BL-mediated tea green leafhoppers infestation on the growth phenotype of tea plants."
Authors: Jaroslav Nisler, Pavel Klimeš, Radka Končitíková, Alena Kadlecová, Jiří Voller, Mahfam Chalaki, Michael Karampelias, Nino Murvanidze, Stefaan P O Werbrouck, David Kopečný, Libor Havlíček, Nuria de Diego, Pierre Briozzo, Solange Moréra, David Zalabák and Lukáš Spíchal.
Journal of Experimental Botany (2024)
Abstract: "Cytokinin oxidase/dehydrogenase (CKX) inhibitors reduce the degradation of cytokinins in plants and thereby may improve the efficiency of agriculture and plant tissue culture-based practices. Here, we report a synthesis and structure-activity relationship study of novel urea derivatives concerning their CKX inhibitory activity. The best compounds showed sub-nanomolar IC50 values with maize ZmCKX1, the lowest value yet documented. Other CKX isoforms of maize (Zea mays) and Arabidopsis were also inhibited very effectively. The binding mode of four compounds was characterized based on high-resolution crystal complex structures. Using the soil nematode Caenorhabditis elegans, and human skin fibroblasts, key CKX inhibitors with low toxicity were identified. These compounds enhanced the shoot regeneration of Lobelia, Drosera, and Plectranthus, as well as the growth of Arabidopsis and Brassica napus. At the same time, a key compound (namely 82), activated a cytokinin primary response gene ARR5:GUS and cytokinin sensor TCSv2:GUS, without activating the Arabidopsis cytokinin receptors AHK3 and AHK4. This strongly implies that the effect of compound 82 is due to the upregulation of cytokinin signalling. Overall, this work presents highly effective and easily prepared CKX inhibitors with a low risk of environmental toxicity for further investigation of their potential in agriculture and biotechnology."
Authors: Shotaro Hirota, Yusuke Ito, Shiro Inoue, Naoki Kitaoka, Tohru Taniguchi, Kenji Monde, Kosaku Takahashi and Hideyuki Matsuura.
Journal of Natural Products (2024)
Abstract: "cis-12-oxo-Phytodieneoic acid-α-monoglyceride (1) was isolated from Arabidopsis thaliana. The chemical structure of 1 was elucidated based on exhaustive 1D and 2D NMR spectroscopic measurements and supported by FDMS and HRFDMS data. The absolute configuration of the cis-OPDA moiety in 1 was determined by comparison of 1H NMR spectra and ECD measurements. With respect to the absolute configuration of the β-position of the glycerol backbone, the 2:3 ratio of (S) to (R) was determined by making ester-bonded derivatives with (R)-(+)-α-methoxy-α-trifluoromethylphenylacetyl chloride and comparing 1H NMR spectra. Wounding stress did not increase endogenous levels of 1, and it was revealed 1 had an inhibitory effect of A. thaliana post germination growth. Notably, the endogenous amount of 1 was higher than the amounts of (+)-7-iso-jasmonic acid and (+)-cis-OPDA in intact plants. 1 also showed antimicrobial activity against Gram-positive bacteria, but jasmonic acid did not. It was also found that α-linolenic acid-α-monoglyceride was converted into 1 in the A. thaliana plant, which implied α-linolenic acid-α-monoglyceride was a biosynthetic intermediate of 1."
Authors: Craig L. Cowling, Arielle L. Homayouni, Jodi B. Callwood , Maxwell R. McReynolds, Jasper Khor, Haiyan Ke, Melissa A. Draves, Katayoon Dehesh, Justin W. Walley, Lucia C. Strader and Dior R. Kelley.
PNAS (2024)
Significance: Roots are a key organ for water and nutrient uptake in plants. Changes in root architecture can impact yield and resilience to stress in crops. To find factors that contribute to root development in corn, a genetic screen was performed. Herein, we identify a hormone transporter that influences numerous root traits of agronomic significance. This work has implications for translational approaches aimed at improving cereal crops.
Abstract: "Plant root systems play a pivotal role in plant physiology and exhibit diverse phenotypic traits. Understanding the genetic mechanisms governing root growth and development in model plants like maize is crucial for enhancing crop resilience to drought and nutrient limitations. This study focused on identifying and characterizing ZmPILS6, an annotated auxin efflux carrier, as a key regulator of various crown root traits in maize. ZmPILS6-modified roots displayed reduced network area and suppressed lateral root formation, which are desirable traits for the “steep, cheap, and deep” ideotype. The research revealed that ZmPILS6 localizes to the endoplasmic reticulum and plays a vital role in controlling the spatial distribution of indole-3-acetic acid (IAA or “auxin”) in primary roots. The study also demonstrated that ZmPILS6 can actively efflux IAA when expressed in yeast. Furthermore, the loss of ZmPILS6 resulted in significant proteome remodeling in maize roots, particularly affecting hormone signaling pathways. To identify potential interacting partners of ZmPILS6, a weighted gene coexpression analysis was performed. Altogether, this research contributes to the growing knowledge of essential genetic determinants governing maize root morphogenesis, which is crucial for guiding agricultural improvement strategies."
Authors: Yidong Wang, Lanlan Jiang, Dongdong Kong, Jie Meng, Meifang Song, Wenxiu Cui, Yaqi Song, Xiaofan Wang, Jiao Liu, Rui Wang, Yikun He, Caren Chang and Chuanli Ju.
New Phytologist (2024)
Abstract: "The conquest of land by plants was concomitant with, and possibly enabled by, the evolution of three-dimensional (3D) growth. The moss Physcomitrium patens provides a model system for elucidating molecular mechanisms in the initiation of 3D growth. Here, we investigate whether the phytohormone ethylene, which is believed to have been a signal before land plant emergence, plays a role in 3D growth regulation in P. patens. We report ethylene controls 3D gametophore formation, based on results from exogenously applied ethylene and genetic manipulation of PpEIN2, which is a central component in the ethylene signaling pathway. Overexpression (OE) of PpEIN2 activates ethylene responses and leads to earlier formation of gametophores with fewer gametophores produced thereafter, phenocopying ethylene-treated wild-type. Conversely, Ppein2 knockout mutants, which are ethylene insensitive, show initially delayed gametophore formation with more gametophores produced later. Furthermore, pharmacological and biochemical analyses reveal auxin levels are decreased in the OE lines but increased in the knockout mutants. Our results suggest that evolutionarily, ethylene and auxin molecular networks were recruited to build the plant body plan in ancestral land plants. This might have played a role in enabling ancient plants to acclimate to the continental surfaces of the planet."
Authors: Songyu Pei, Qi Tao, Wenke Li, Guoning Qi, Borong Wang, Yan Wang, Shiwen Dai, Qiujing Shen, Xi Wang, Xiaomei Wu, Shijian Xu, Lynn Theprungsirikul, Jingyuan Zhang, Liang Liang, Yuantao Liu, Kena Chen, Yang Shen, Bridget M. Crawford, Mengjia Cheng, Qi Zhang, Yiqi Wang, Hongli Liu, Benguang Yang, Bryan Krichilsky, Jessica Pei, Karen Song, Douglas M. Johnson, Zhonghao Jiang, Feihua Wu, Gary B. Swift, Huanghe Yang, Zhonghua Liu, Xuexiao Zou, Tuan Vo-Dinh, Feng Liu, Zhen-Ming Pei and Fang Yuan.
Nature (2024)
One-sentence summary: Screening in Escherichia coli and biochemical experiments show that in Arabidopsis thaliana, OSCA2.1 and OSCA2.2 function as plant sensors of hypo-osmolarity, utilize Ca2+ oscillations as second messengers and have crucial roles in pollen germination.
Abstract: "Higher plants survive terrestrial water deficiency and fluctuation by arresting cellular activities (dehydration) and resuscitating processes (rehydration). However, how plants monitor water availability during rehydration is unknown. Although increases in hypo-osmolarity-induced cytosolic Ca2+ concentration (HOSCA) have long been postulated to be the mechanism for sensing hypo-osmolarity in rehydration1,2, the molecular basis remains unknown. Because osmolarity triggers membrane tension and the osmosensing specificity of osmosensing channels can only be determined in vivo3,4,5, these channels have been classified as a subtype of mechanosensors. Here we identify bona fide cell surface hypo-osmosensors in Arabidopsis and find that pollen Ca2+ spiking is controlled directly by water through these hypo-osmosensors—that is, Ca2+ spiking is the second messenger for water status. We developed a functional expression screen in Escherichia coli for hypo-osmosensitive channels and identified OSCA2.1, a member of the hyperosmolarity-gated calcium-permeable channel (OSCA) family of proteins6. We screened single and high-order OSCA mutants, and observed that the osca2.1/osca2.2 double-knockout mutant was impaired in pollen germination and HOSCA. OSCA2.1 and OSCA2.2 function as hypo-osmosensitive Ca2+-permeable channels in planta and in HEK293 cells. Decreasing osmolarity of the medium enhanced pollen Ca2+ oscillations, which were mediated by OSCA2.1 and OSCA2.2 and required for germination. OSCA2.1 and OSCA2.2 convert extracellular water status into Ca2+ spiking in pollen and may serve as essential hypo-osmosensors for tracking rehydration in plants."
Authors: Malathi Bheri, Amit Kumar and Girdhar K. Pandey.
Trends in Plant Science (2024)
Abstract: "Potassium (K) is an essential macronutrient for plant development. Although the low-K+-responsive calcium (Ca2+) signaling pathway is known, its regulator remained elusive. Li et al. recently demonstrated that the target of rapamycin complex (TORC) and Ca2+ signaling pathways show reciprocal regulation of K+-responsive growth in plants."
Authors: L. Wang, E. Brouard, D. Prodhomme, G. Hilbert, C. Renaud, J.-P. Petit, E. Edwards, A. Betts, S. Delrot, N. Ollat, S. Guillaumie, Z.W. Dai and E. Gomès.
Acta Horticulturae (2024)
Abstract: "High temperatures (HT) usually increase berry sugar concentrations, while reducing organic acids and anthocyanin levels, thereby modifying wine quality and character. Viticultural practices such as leaf-to-fruit ratio (L/F) manipulation, combined with application of abscisic acid (ABA) can potentially be used to mitigate HT effects and adjust berry composition. In the present work, after confirming the effects of LF and ABA applications on berry composition over a six-year period, we studied the mechanisms underlying these effects on berry composition and ABA metabolism in 'Cabernet Sauvignon' fruiting-cuttings (i.e., Mullins' vines). Reducing L/F significantly reduced berry sugar and anthocyanin contents, and slightly increased total organic acid content. ABA application increased anthocyanin concentration, and partially restored the coupling between sugar and anthocyanin accumulation under low L/Fs, without affecting the sugar/organic acid ratio. Several transcripts of the anthocyanin biosynthesis pathway (CHS2, CHS3, CHI, F3H, DFR, LODX, UFGT, MybA1 and MybA2) were less abundant under low L/F ratio, whereas some transcripts (CHI, F3H, F35H, LODX, UFGT, MybA1 and MybA2) were upregulated after ABA treatment. ABA treatment had little effect on the transcript abundance of genes related to sugar accumulation, except SWEET10 in 12L plants. Carbon source limitation to clusters also had little effect on ABA biosynthetic genes, but decreased berry ABA concentration. In conclusion, our results show that ABA and sugar signaling synergistically interact to regulate the expression of anthocyanin biosynthetic genes and increase anthocyanin accumulation. Thus, combining L/F ratio manipulation with ABA applications may offer a fine-tuned way to reduce sugar concentration, while maintaining anthocyanin concentrations in grape berry, potentially offering a way to partially alleviate the warming effects of climate change."
Authors: Shanggeng Xie, Fengyue Wang, Mengdi Li, Zengjie Hu, Han Wang, Zhizhong Zhang, Xiang Chen, Zhiye Gu, Guoping Zhang and Lingzhen Ye.
The Plant Journal (2024)
Significance Statement: Gene editing of HvGA20ox2 led to reduced plant height, improved yield potential, and pre-harvest sprouting in barley. A novel allele sdw1.ZU9 containing a 96-bp fragment located in the promoter region of HvGA20ox2 results in suppression of the gene expression, leading to reduced plant height and increased germination rate.
Abstract: "Several dwarf and semi-dwarf genes have been identified in barley. However, only a limited number have been effectively utilized in breeding programs to cultivate lodging resistant varieties. This is due to the common association of dwarf and semi-dwarf traits with negative effects on malt quality. In this study, we employed gene editing to generate three new haplotypes of sdw1/denso candidate gene gibberellin (GA) 20-oxidase2 (GA20ox2). These haplotypes induced a dwarfing phenotype and enhancing yield potential, and promoting seed dormancy, thereby reducing pre-harvest sprouting. Moreover, β-amylase activity in the grains of the mutant lines was significantly increased, which is beneficial for malt quality. The haplotype analysis revealed significant genetic divergence of this gene during barley domestication and selection. A novel allele (sdw1.ZU9), containing a 96-bp fragment in the promoter region of HvGA20ox2, was discovered and primarily observed in East Asian and Russian barley varieties. The 96-bp fragment was associated with lower gene expression, leading to lower plant height but higher germination rate. In conclusion, HvGA20ox2 can be potentially used to develop semi-dwarf barley cultivars with high yield and improved malt quality."
Authors: Wei Zeng, Xiutao Wang and Mengyuan Li.
Plant Direct (2024)
Abstract: "Auxin plays a key role in plant growth and development through auxin local synthesis, polar transport, and auxin signaling. Many previous reports on Arabidopsis have found that various types of auxin-related genes are involved in the development of the cotyledon, including the number, symmetry, and morphology of the cotyledon. However, the molecular mechanism by which auxin is involved in cotyledon formation remains to be elucidated. PID, which encodes a serine/threonine kinase localized to the plasma membrane, has been found to phosphorylate the PIN1 protein and regulate its polar distribution in the cell. The loss of function of pid resulted in an abnormal number of cotyledons and defects in inflorescence. It was interesting that the pid mutant interacted synergistically with various types of mutant to generate the severe developmental defect without cotyledon. PID and these genes were indicated to be strongly correlated with cotyledon formation. In this review, PID-centered genetic interactions, related gene functions, and corresponding possible pathways are discussed, providing a perspective that PID and its co-regulators control cotyledon formation through multiple pathways."
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Authors: Hiromitsu Tabeta and Masami Y. Hirai.
FEBS Letters (2024)
Summary: Here, we identified l-2-aminopimelic acid as a novel functional amino acid that promotes high lateral root density. By adding this amino acid, the root system in a wide range of dicotyledonous plant species was converted from a primary-lateral root system to a fibrous root-like system.
Abstract: "The identification of chemicals that modulate plant development and adaptive responses to stresses has attracted increasing attention for agricultural applications. Recent basic studies have identified functional amino acids that are essential for plant organogenesis, indicating that amino acids can regulate plant growth. In this study, we newly identified 2-aminopimelic acid (2APA), a nonproteinogenic amino acid, as a novel bioactive compound involved in root morphogenesis. This biological effect was confirmed in several plant species. Our phenotypic analysis revealed that the bioactive 2APA is an L-form stereoisomer. Overall, our study identified a promising root growth regulator and provided insight into the intricate metabolism related to root morphology."
Authors: Yuqi Liu, Shangyu Chen, Sikander Pal, Jingquan Yu, Yanhong Zhou, Lam-Son Phan Tran and Xiaojian Xia.
New Crops (2024)
Abstract: "Plants have evolved varied structures for environmental adaptation. Shoot branching, as a part of plant architecture, influences the allocation of sugars produced by photosynthesis and thus greatly impacts crop yields. The activity of axillary meristem, and apical dominance governs the shoot branching patterns. In this review, we summarize the key factors involved in the formation of lateral branches, and the mechanisms of how these factors are interconnected. In particular, we focus on recent advances in understanding how sugar and environmental signals affect the hormonal signaling network to regulate apical dominance. Ultimately, we propose that epigenetic modifications are critical mechanisms underlying the plasticity of shoot branching, and that precise targeted gene editing is promising for shaping the ideal plant architecture."
Authors: Qingjun Xie, Danni Wang, Yuting Ding, Wenshuo Gao, Jinghang Li, Chuanwang Cao, Lili Sun, Zhongyuan Liu and Caiqiu Gao.
Science of the Total Environment (2024)
Highlights: • Various plant hormones play roles in the accumulation of Cd in T. hispida. • ABA and ethylene antagonistic regulation of Cd accumulation in T. hispida • ThDRE1A regulates Cd accumulation by regulating ThABAH2.5 and ThACCO3.1.
Abstract: "Tamarix hispida is highly tolerant to salt, drought and heavy metal stress and is a potential material for the remediation of cadmium (Cd)-contaminated soil under harsh conditions. In this study, T. hispida growth and chlorophyll content decreased, whereas flavonoid and carotenoid contents increased under long-term Cd stress (25 d). The aboveground components of T. hispida were collected for RNA-seq to investigate the mechanism of Cd accumulation. GO and KEGG enrichment analyses revealed that the differentially expressed genes (DEGs) were significantly enriched in plant hormone-related pathways. Exogenous hormone treatment and determination of Cd2+ levels showed that ethylene (ETH) and abscisic acid (ABA) antagonists regulate Cd accumulation in T. hispida. Twenty-five transcription factors were identified as upstream regulators of hormone-related pathways. ThDRE1A, which was previously identified as an important regulatory factor, was selected for further analysis. The results indicated that ThABAH2.5 and ThACCO3.1 were direct target genes of ThDRE1A. The determination of Cd2+, ABA, and ETH levels indicated that ThDRE1A plays an important role in Cd accumulation through the antagonistic regulation of ABA and ethylene. In conclusion, these results reveal the molecular mechanism underlying Cd accumulation in plants and identify candidate genes for further research."
Author: Munkhtsetseg Tsednee.
Plant Physiology (2024)
Excerpts: "In this issue of Plant Physiology, Wu et al. (2024) investigated the N responses in two maize lines, and identified a transcription factor (TF) involved in the regulation of nitrate uptake. First, the authors looked at gene expression in response to nitrogen recovery after depletion. By correlating gene co-expression network data with nitrate supplied time points, they successfully identified four consensus N-related modules conserved in two representative maize lines, B73 and Mo17."
"Moreover, zmereb97 mutants accumulate biomass more slowly than wild-type plants both under nitrate-limited and fully nitrate-supplied conditions, and mutants produce less grains, with 13 to 15% reductions in grain yields compared to wild-type plants under soil growth conditions (Fig. A and B)."
"To reveal how ZmEREB97 regulates nitrate uptake, the authors conducted yeast one hybrid assays using 17 selected nitrate transporter (NRT) genes potentially regulated by ZmEREB97 and showed that six ZmNRTs interact with ZmEREB97 via GCC-elements in their promoters for transcriptional activation. These six are the transporters mainly responsible for the nitrate uptake from soil (Fig. C). Direct controlling of uptake transporters is vital in that it is the primary source of nutrients into roots. Therefore, Wu et al. (2024) have identified a critical player, ZmEREB97, as a major positive regulator in nitrate response in maize."
Authors: Pierre Gautrat, Sanne E. A. Matton, Lisa Oskam, Siddhant S. Shetty, Kyra J. van der Velde and Ronald Pierik.
Journal of Experimental Botany (2024)
Abstract: "Plants growing in dense vegetation stands need to flexibly position their photosynthetic organs to ensure optimal light capture in a competitive environment. They do so through a suite of developmental responses referred to as the shade avoidance syndrome. Belowground, root development is also adjusted in response to aboveground neighbour proximity. Canopies are dynamic and complex environments with heterogeneous light cues in the far-red, red, blue and UV spectrum, which can be perceived with photoreceptors by spatially separated plant tissues. Molecular regulation of plant architecture adjustment via PHYTOCHROME-INTERACTING FACTOR (PIF) transcription factors and growth-related hormones such as auxin, gibberellic acid, brassinosteroids and abscisic acid were historically studied without much attention to spatial or tissue-specific context. Recent developments and technologies have, however, sparked strong interest in spatially explicit understanding of shade avoidance regulation. Other environmental factors such as temperature and nutrient availability interact with the molecular shade avoidance regulation network, often depending on the spatial location of the signals, and the responding organs. Here, we aim to review recent advances in how plants respond to heterogenous light cues and integrate these with other environmental signals."
Authors: Zengkang Zhai, Qianqian Ao, Liuqing Yang, Fangxiao Lu, Haokun Cheng, Qinxin Fang, Chun Li, Qinqin Chen, Jingli Yan, Yongsheng Wei, Yuan-Qing Jiang and Bo Yang.
Journal of Food and Agricultural Chemistry (2024)
Abstract: "Global water deficit is a severe abiotic stress threatening the yielding and quality of crops. Abscisic acid (ABA) is a phytohormone that mediates drought tolerance. Protein kinases and phosphatases function as molecular switches in eukaryotes. Protein phosphatases type 2C (PP2Cs) are a major family that play essential roles in ABA signaling and stress responses. However, the role and underlying mechanism of PP2C in rapeseed (Brassica napus L.) mediating drought response has not been reported yet. Here, we characterized a PP2C family member, BnaPP2C37, and its expression level was highly induced by ABA and dehydration treatments. It negatively regulates drought tolerance in rapeseed. We further identified that BnaPP2C37 interacted with multiple PYR/PYL receptors and a drought regulator BnaCPK5 (calcium-dependent protein kinase 5) through yeast two-hybrid (Y2H) and bimolecular fluorescence complementation (BiFC) assays. Specifically, BnaPYL1 and BnaPYL9 repress BnaPP2C37 phosphatase activity. Moreover, the pull-down assay and phosphatase assays show BnaPP2C37 interacts with BnaCPK5 to dephosphorylate BnaCPK5 and its downstream BnaABF3. Furthermore, a dual-luciferase assay revealed BnaPP2C37 transcript level was enhanced by BnaABF3 and BnaABF4, forming a negative feedback regulation to ABA response. In summary, we identified that BnaPP2C37 functions negatively in drought tolerance of rapeseed, and its phosphatase activity is repressed by BnaPYL1/9 whereas its transcriptional level is upregulated by BnaABF3/4."
Authors: Wentao Yang, Huawei Zhai, Fangming Wu, Lei Deng, Yu Chao, Xianwen Meng, Qian Chen, Chenhuan Liu, Xiaomin Bie, Chuanlong Sun, Yang Yu, Xiaofei Zhang, Xiaoyue Zhang, Zeqian Chang, Min Xue, Yajie Zhao, Xiangbing Meng, Boshu Li, Xiansheng Zhang, Dajian Zhang, Xiangyu Zhao, Caixia Gao, Jiayang Li and Chuanyou Li.
Cell (2024)
Editor's view: REF1 is a systemin-independent local wound signal that promotes regenerative responses, and the application of REF1 enhances the transformation efficiency of recalcitrant crops by boosting their regeneration capacity.
Highlights: • REF1 is a systemin-independent local wound signal promoting regenerative responses • REF1 is perceived by the receptor PORK1 for plant regeneration • REF1-PORK1 promotes regeneration via activating the master transcription factor WIND1 • REF1 offers a simple method to boost the regeneration efficiency of recalcitrant crops
Abstract: "Plants frequently encounter wounding and have evolved an extraordinary regenerative capacity to heal the wounds. However, the wound signal that triggers regenerative responses has not been identified. Here, through characterization of a tomato mutant defective in both wound-induced defense and regeneration, we demonstrate that in tomato, a plant elicitor peptide (Pep), REGENERATION FACTOR1 (REF1), acts as a systemin-independent local wound signal that primarily regulates local defense responses and regenerative responses in response to wounding. We further identified PEPR1/2 ORTHOLOG RECEPTOR-LIKE KINASE1 (PORK1) as the receptor perceiving REF1 signal for plant regeneration. REF1-PORK1-mediated signaling promotes regeneration via activating WOUND-INDUCED DEDIFFERENTIATION 1 (WIND1), a master regulator of wound-induced cellular reprogramming in plants. Thus, REF1-PORK1 signaling represents a conserved phytocytokine pathway to initiate, amplify, and stabilize a signaling cascade that orchestrates wound-triggered organ regeneration. Application of REF1 provides a simple method to boost the regeneration and transformation efficiency of recalcitrant crops.
Authors: Zhen Zhang, Cui Chen, Changyue Jiang, Hong Lin, Yuhui Zhao and Yinshan Guo.
Horticulture Research (2024)
Abstract: "Wounding stress induces the biosynthesis of various secondary metabolites in plants, including anthocyanin. However, the underlying molecular mechanism remains elusive. Here, we reported that a transcription factor, VvWRKY5, promotes wounding-induced anthocyanin accumulation in grape (Vitis vinifera). Biochemical and molecular analyses demonstrated that wounding stress significantly increased anthocyanin content, and VvMYBA1 plays an essential role in this process. VvWRKY5 could interact with VvMYBA1 and amplify the activation effect of VvMYBA1 on its target gene VvUFGT. The transcript level of VvWRKY5 was notably induced by wounding treatment. Moreover, our data demonstrated that VvWRKY5 could promote the synthesis of jasmonic acid (JA), a phytohormone that acts as a positive modulator in anthocyanin accumulation, by directly binding to the W-box element in the promoter of the JA biosynthesis-related gene VvLOX and enhancing its activities, and this activation was greatly enhanced by the VvWRKY5-VvMYBA1 protein complex. Collectively, our findings show that VvWRKY5 plays crucial roles in wounding-induced anthocyanin synthesis in grape and elucidates the transcriptional regulatory mechanism of wounding-induced anthocyanin accumulation."
Authors: Zilu Zhang, Qi Wang, Haiqiao Yan, Xiaoyan Cang, Wei Li, Jinyu He, Meixiang Zhang, Laiqing Lou, Ran Wang and Ming Chang.
New Crops (2024)
Abstract: "Calcium ions (Ca2+) serve as key messengers in plant immune reactions. A typical Ca2+ signaling involves three steps: encoding specific Ca2+ signatures by Ca2+-permeable channels, decoding Ca2+ signals by Ca2+ sensors, and downstream responses. This review focuses on plasma membrane-localized Ca2+-permeable channels and cytosolic Ca2+ sensors, unraveling their roles in cytosolic Ca2+ influx and immune signaling during pattern-triggered immunity, effector-triggered immunity, and autoimmunity. Several unresolved questions were highlighted, including the regulation of Ca2+-permeable channel activity for immune induction and the mechanism behind Ca2+ influx-triggered hypersensitive response cell death. This concise overview provides insights into the complex interplay of Ca2+ signaling in plant immunity, paving the way for future investigations on molecular plant-microbe interactions."
Authors: Qi Zhang, Jiancan Du, Xiao Han and Yanru Hu.
Plant Diversity (2024)
Highlights • Salinity stress enhances COI1-mediated jasmonate signaling. • JAZ1 physically interacts with ABF3. • ABF3 positively regulate jasmonate signaling under saline condition. • JAZ1 suppresses ABF3-enhanced jasmonate signaling.
Abstract: "Salinity is a severe abiotic stress that affects plant growth and yield. Salinity stress activates jasmonate (JA) signaling in Arabidopsis thaliana, but the underlying molecular mechanism remains to be elucidated. In this study, we confirmed the activation of JA signaling under saline conditions and demonstrated the importance of the CORONATINE INSENSITIVE1 (COI1)-mediated signaling for this process. Phenotypic analyses reflected the negative regulation of JASMONATE ZIM-DOMAIN (JAZ) repressors during salinity stress-enhanced JA signaling. Mechanistic analyses revealed that JAZ proteins physically interact with ABSCISIC ACID-RESPONSIVE ELEMENT BINDING FACTOR1 (ABF1), AREB1/ABF2, ABF3, and AREB2/ABF4, which belong to the basic leucine zipper (bZIP) transcription factor family and respond to salinity stress. Analyses on the ABF3 overexpression plants and ABF mutants indicated the positive role of ABF3 in regulating JA signaling under saline condition. Furthermore, ABF3 overexpression partially recovered the JA-related phenotypes of JAZ1-Δ3A plants. Moreover, ABF3 was observed to indirectly activate ALLENE OXIDE SYNTHASE (AOS) transcription, but this activation was inhibited by JAZ1. In addition, ABF3 competitively bind to JAZ1, thereby decreasing the interaction between JAZ1 and MYC2, which is the master transcription factor controlling JA signaling. Collectively, our findings have clarified the regulatory effects of ABF3 on JA signaling and provide new insights into how JA signaling is enhanced following an exposure to salinity stress."
Authors: Shasha Guo, Junmin Ai, Nannan Zheng, Hairui Hu, Zhuoyi Xu, Quanquan Chen, Li Li, Yunjun Liu, Hongwei Zhang, Jieping Li, Qingchun Pan, Fanjun Chen, Lixing Yuan, Junjie Fu, Riliang Gu, Jianhua Wang and Xuemei Du.
Plant Biotechnology Journal (2024)
Abstract: "Seed vigour, including rapid, uniform germination and robust seedling establishment under various field conditions, is becoming an increasingly essential agronomic trait for achieving high yield in crops. However, little is known about this important seed quality trait. In this study, we performed a genome-wide association study to identify a key transcription factor ZmRap2.7, which regulates seed vigour through transcriptionally repressing expressions of three ABA signalling genes ZmPYL3, ZmPP2C and ZmABI5 and two phosphatidylethanolamine-binding genes ZCN9 and ZCN10. In addition, ZCN9 and ZCN10 proteins could interact with ZmPYL3, ZmPP2C and ZmABI5 proteins, and loss-of-function of ZmRap2.7 and overexpression of ZCN9 and ZCN10 reduced ABA sensitivity and seed vigour, suggesting a complex regulatory network for regulation of ABA signalling mediated seed vigour. Finally, we showed that four SNPs in ZmRap2.7 coding region influenced its transcriptionally binding activity to the downstream gene promoters. Together with previously identified functional variants within and surrounding ZmRap2.7, we concluded that the distinct allelic variations of ZmRap2.7 were obtained independently during maize domestication and improvement, and responded separately for the diversities of seed vigour, flowering time and brace root development. These results provide novel genes, a new regulatory network and an evolutional mechanism for understanding the molecular mechanism of seed vigour."
Authors: Shuo Li, Zhongjuan Zhao, Qing Lu, Mingru Li, Xuehuan Dai, Mengqi Shan, Zhenhua Liu, Ming-Yi Bai and Fengning Xiang.
The Plant Journal (2024)
Significance Statement: miR394 and its target gene LEAF CURLING RESPONSIVENESS are involved in BR signaling by affecting BRASSINOSTEROID INSENSITIVE2 accumulation.
Abstract: The interplay between microRNAs (miRNAs) and phytohormones allows plants to integrate multiple internal and external signals to optimize their survival of different environmental conditions. Here, we report that miR394 and its target gene LEAF CURLING RESPONSIVENESS (LCR), which are transcriptionally responsive to BR, participate in BR signaling to regulate hypocotyl elongation in Arabidopsis thaliana. Phenotypic analysis of various transgenic and mutant lines revealed that miR394 negatively regulates BR signaling during hypocotyl elongation, whereas LCR positively regulates this process. Genetically, miR394 functions upstream of BRASSINOSTEROID INSENSITIVE2 (BIN2), BRASSINAZOLE RESISTANT1 (BZR1), and BRI1-EMS-SUPPRESSOR1 (BES1), but interacts with BRASSINOSTEROID INSENSITIVE1 (BRI1) and BRI1 SUPRESSOR PROTEIN (BSU1). RNA-sequencing analysis suggested that miR394 inhibits BR signaling through BIN2, as miR394 regulates a significant number of genes in common with BIN2. Additionally, miR394 increases the accumulation of BIN2 but decreases the accumulation of BZR1 and BES1, which are phosphorylated by BIN2. MiR394 also represses the transcription of PACLOBUTRAZOL RESISTANCE1/5/6 and EXPANSIN8, key genes that regulate hypocotyl elongation and are targets of BZR1/BES1. These findings reveal a new role for a miRNA in BR signaling in Arabidopsis.
Authors: Meiying Liu, Chaoran Wang, Hongliang Ji, Maoxiang Sun, Tongyu Liu, Jiahao Wang, Hui Cao and Qinggang Zhu.
Frontiers in Plant Science (2024)
Abstract: "In recent years, the ethylene-mediated ripening and softening of non-climacteric fruits have been widely mentioned. In this paper, recent research into the ethylene-mediated ripening and softening of non-climacteric fruits is summarized, including the involvement of ethylene biosynthesis and signal transduction. In addition, detailed studies on how ethylene interacts with other hormones to regulate the ripening and softening of non-climacteric fruits are also reviewed. These findings reveal that many regulators of ethylene biosynthesis and signal transduction are linked with the ripening and softening of non-climacteric fruits. Meanwhile, the perspectives of future research on the regulation of ethylene in non-climacteric fruit are also proposed. The overview of the progress of ethylene on the ripening and softening of non-climacteric fruit will aid in the identification and characterization of key genes associated with ethylene perception and signal transduction during non-climacteric fruit ripening and softening."
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